Welcome!
The Analytical and Translational Genomics Resource primarily provides next generation sequencing technologies such as RNA-seq, whole genome sequencing, single-cell RNA-seq, spatial transcriptomics, and more coupled with expert bioinformatics analysis. The ATG Shared Resource is available for use by all faculty at UNM and its affiliates, and all investigators are encouraged to contact us to find out how we can help with their research.
Singular Genomics G4 Next-Generation Sequencing: The powerful G4 sequencing instrument is ideal for next-generation sequencing assays including exome sequencing, gene expression (RNA-seq) assays, epigenetics assays (ChIP-seq) and targeted sequencing of cancer-relevant genes, even from FFPE samples. The instrument can produce up to 1.6 billion paired end 150 bp x 150 bp reads per run.
Expert Bioinformatics Data Analysis: ATG Shared Resource staff use sophisticated data analysis methods to analyze gene expression and other genomic data and strive to provide our users with publication-quality figures for their manuscripts or grant applications. We use R/Bioconductor and commercial software packages to explore the large and complicated data sets generated by genomics methods.
10X Genomics Single Cell and Spatial Transcriptomics: The ATG shared resource has a suite of instruments from 10X Genomics, including the Chromium iX, CytAssist, and Xenium Analyzer. There are several assays available from 10X Genomics that ATG is able to provide to our users. Chromium assays use single-cell suspensions and provide single-cell transcriptomic, epigenetic, and/or immune receptor data. Visium and Visium HD are spatial transcriptomics platforms that provide gene expression data in their spatial context. Xenium is a spatial platform that analyzes in-situ gene expression. Visium and Xenium use FFPE or fresh-frozen tissue sections.
Viswanathan Palanisamy, PhD
Professor, Internal Medicine: Molecular Medicine
Office: CRF 323A
VPalanisamy@salud.unm.edu
| Hours | Location |
|
Monday - Friday 8:00 AM - 5 PM |
Cancer Research Facility Rooms: 118, and 124 |
| Fixed Cost Services |
| ► Data Analysis (2) | |||
| Name | Description | Price | |
|---|---|---|---|
| Bioinformatics Analysis Per Hr |
Includes initial consultation, quality controls, workflow design, data processing, storage and support for up to 1 year for this project only. Some projects will require more than one of these charges. |
External (Non-Profit)
$157.50
each
|
|
| Data Handling & Computing - Project Start Fee |
External (Non-Profit)
$367.50
each
|
||
| ► G4 sequencing (2) | |||
| Name | Description | Price | |
| G4 F3 flow cell - 100 cycles |
External (Non-Profit)
$1,320.00
each
|
||
| G4 F3 flow cell - 300 cycles |
External (Non-Profit)
$1,740.00
each
|
||
| ► Instrument Annual Fee (1) | |||
| Name | Description | Price | |
| Agilent Bioanalyzer annual fee |
per lab/per year |
Inquire | |
| ► Lab Services (3) | |||
| Name | Description | Price | |
| Instrument Fee |
10% of primary reagent cost |
Inquire | |
| Laboratory Labor Per Hour |
Expert ATG Staff labor charge |
External (Non-Profit)
$134.00
/hr
|
|
| Reagents, kits, and disposables |
Per dollar pass-through |
Corporate
$1.50
each
|
|
